DEPARTMENT OF PLANT MOLECULAR BIOLOGY

2007

1. Ahmed, N., Saini, V., Raghuvanshi, S., Khurana, J.P., Tyagi, A.K., Tyagi, Anil K., & Hasnain, S.E., 2007. Molecular analysis of a leprosy immunotherapeutic bacillus provides insights into Mycobacterium evolution. PLoS ONE 2(10): e968 (pp 1-8).
2. Agarwal, P., Arora, R., Ray, S., Singh, A.K., Singh, V.P., Takatsuji, H., Kapoor, S. & Tyagi, A.K. 2007. Genome-wide identification of C₂H₂ zinc-finger gene family in rice and their phylogeny and expression analysis. Plant Mol. Biol. 65: 467-485.
3. Agarwal, S., Kapoor, A., Lakshmi, O.S. & Grover, A. 2007.  Production of phenotypic analysis of rice transgenics with altered level of pyruvate decarboxylase and alchol dehydrogenase protein. Plant Physiol. Biochem. 45: 637-46.
4. Arora, R., Agarwal, P., Ray, S., Singh, A., Singh, V., Tyagi, A.K. & Kapoor, S. 2007. MADS-box gene family MADS-box gene family in rice: Genome wide identification, organization and expression profiling during reproductive development and stress BMC Genomics 8: 242 (21 pages).
5. Batra, G., Chuhan, V.S., Singh, A., Sarkar, N.K. & Grover, A. 2007. Complexity of rice HSp100 gene family: lessons from rice genome sequence data. J. Biosciences 32: 611-619.
6. Chauhan, H., Desai, S.A. & Khurana, P. 2007. Comparative analysis of the differential regeneration response of various genotype of Triticum aestivum, T. durum, and T.dicoccum. Plant Cell and Organ Culture 91:191-199.
7. Gupta, V., Khurana, R. & Tyagi, A.K. 2007. Promoter of two anther-specific genes confer organ-specific expression in a stage specific manner in in transgenic systems. Plant Cell Reports 26: 1919-1931.
8. Jain, M., Nijhawan, A., Arora, R., Agarwal, P., Ray, S., Sharma, P., Kapoor, S, Tyagi, A.K. & Khurana, J.P. 2007. F-box proteins in rice : genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol:  143: 1467-1483.
9. Jain, M., Sharma, P., Tyagi, S.B., Tyagi, A.K. & Khurana, J.P. 2007. Light regulation and differential tissue-specific expression of phototropin homologues from rice (Oryza sativa ssp. indica). Plant Science 172: 164-171.
10. Kathuria, H., Giri, J., Tyagi, H. & Tyagi, A.K. 2007 Advances in transgenic rice biotechnology. Crit. Rev. Plant Sci: 26: 65-103.
11. Khurana, J.P., Jain, M. & Tyagi, A.K. 2007. Auxin and cytokinin signaling component genes and their potential for crop improvement. In: Varshney R.K. & Toberosa, R. (eds). Genomics-assisted Crop Improvement pp. 289-314 Springer-Verlag, Germany.
12. Khurana, P., Lal, S. & Ravi, V. 2007.  Genes and genomics for mulberry improvement. In: Proc. Regional Seminar on “ Prospects and problems of Sericulture as an Economic Enterprise in North West India”, In : Chakrabarti, S., Khatri, R.K., Srivastav, P.K., Tayal, M.K., Siddiqui, A.A., Babulal & Joshi, D.C., (eds.) pp. 154-157 Regional Sericulture Research Station, Dehradun, Central Silk Board, Govt. of India.
13. Khurana, P., Chauhan, H. & Desai, S.A. 2007. Wheat. In: Kole, C. &  Hall, T.C. (ed.), A Compendium of  Transgenic Crops, Vol.1, (18 pages) Wiley-Blackwell, US.
14. Kumar, N., Kulwal, P.L., Gaur, A., Tyagi, A.K., Khurana, J.P., Khurana, P., Balyan, H.S. & Gupta, P.K. 2007. QTL analysis for grain weight in bread wheat. Euphytica 151: 135-144.
15. Mahalakshmi, A., Singla, B., Khurana, J.P. & Khurana, P. 2007. Role of calcium-calmodulin in auxin-induced somatic embryogenesis in leaf base cultures of wheat (Triticum aestivum). Plant Cell, Tissue & Organ Culture 88: 167-174.
16. Mathur, S. & Dasgupta, I. 2007. Downstream promoter sequence of an Indian isolate of Rice tungro bacilliform virus alters tissue-specific expression in host rice and acts differentially in heterologous systems. Plant Molecular Biology 65: 259-275.
17. Pareek, A., Singla-Pareek, S.L., Sopory, S.K.  & Grover, A. 2007. Analysis of salt stress related transcriptome fingerprints from diverse plant sp. In: Varshney, R.K. & Tuberosa, R. (eds.) Genomics Assisted Crop Improvement pp. 267-287 Springer International.
18. Patil, B.L, Dutt, N., Briddon, R.W., Bull, S.E., Rothenstein, D., Borah, B.K., Dasgupta, I., Stanley, J. & Jeske, H. 2007. Deletion and recombination events between the DNA-A and DNA-B components of Indian cassava-infecting geminiviruses generate defective molecules in Nicotiana benthamiana. Virus Research 124: 59-67.
19. Purohit, S.D., Raghuvanshi, S. & Tyagi, A.K. 2007. Biolistic-mediated DNA delivery and transient expression of GUS in hypocotyls of Feronia himonia L.-a fruit tree. I JB 6: 504-507.
20. Raghunath, M.K., Lal, S. & Khurana, P. 2007. In vitro plant regeneration from different explants of elite mulberry (Morus Sp.) genotypes, AR12, DD and S13. Bangladesh J. Sericulture (invited article).
21. Ravi, V., Khurana, J.P., Tyagi, A.K. & Khurana, P.  2007. Rosales sister to Fabales: towards resolving the rosid puzzle. Molecular Phylogenetics and Evolution 44: 488-493.
22. Rodrigues, V., Bhandari, R., Khurana, J.P. Sharma, P. & Khurana, J.P. 2007. Movement of chloroplasts in mesophyll cells of Garcinia indica in response to UV-B radiation. Curr. Sci. 92: 1610-1613.
23. Ray, S., Agarwal, P., Arora, R., Kapoor, S., & Tyagi, A. K., 2007.  Expression profile of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (oryza sativa L. ssp. Indica). Mol. Gen. Genomics 278: 493-505.
24. The Rice Annotation Project. 2007. Curated genome annotation of Oryza sativa ssp. Japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res. 17: 175-183.
25. Sahi, C., Agarwal, M., Singh, A. & Grover, A. 2007. Molecular Characterization of a novel isoform of rice (Oryza sativa L.) glycine rich – RNA binding protein and evidence for its involvement in high temperature stress response. Plant Sci. 173: 144-155.
26. Schaller, G.E., Dai, K, Hwang, I., Kieber, J.J. & Khurana, J.P. 2007. Nomenclature for two-Component signaling elements of Rice. Plant Physiol. 143: 555-557.
27. Sehgal, A., Khurana, J.P., Sethi, M., Ara, H. & Jain, M. 2007.  Organ identity of the thalloid plant body of Griffthella hookeriana and Polypleurum stylosum – Podostemoideae (Podostemaceae)  Plant Syst. Evol. 267: 93-104.
28. Singh, G., Jain, M., Kulshreshtha, R., Khurana, S. & Singh, P. 2007. Expression and analysis of genes encoding translation initiation factor 3 subunit g (TaeIf3g) and vesicle –associated membrane protein-associated protein (TaVAP) in drought tolerant and susceptible cultivars of wheat. Plant Science 173: 660-669.
29. Singla, B., Tyagi, A.K., Khurana, J.P. & Khurana, P.  2007. Analysis of expression profile of selected genes expressed during auxin-induced somatic embryogenesis in leaf base system of wheat (Triticum aestivum) and their possible interactions. Plant Mol. Biol. 65: 677-692.
30. Tyagi, A.K. 2007. Rice genome and beyond. Natl. Acad. Sci. Lett. 30: 191-196.
31. Tyagi, A.K., Khurana, J.P., Khurana, P., Kapoor, S., Singh, V.P., Singh, A.K., Thakur, J.K., Gupta, S., Anand, S., Vij, S., Jain, M., Ray, S., Agarwal, P., Arora, R., Sharma, P., Mukherjee, S., Nijhawan, A., Giri, J. & Khurana, R. 2007. Expression and functional analysis of rice genes involved in reproductive development and stress response. In: Rice Genetics V, 313-330 IRRI, Philippines.
32. Tyagi, A.K., Khurana, J., Khurana, P., Vij, S., Jain, M. & Ravi, V. 2007. Evolution and phylogenetic relationship of rice genome. In: Sharma A.K. & Sharma, A. (eds). Plant Genome: Biodiversity and Evolution (Volume 1E: Phanerogams : Angiosperms) pp. 15-41 Science Publishers, Inc., USA.
33. Tyagi, H., Rajasubramaniam, S. & Dasgupta, I. 2007. Regeneration and Agrobacterium - mediated transformation of a popular indica rice variety ADT39. Current Science 93: 678-683.
34. Vij, S. & Tyagi, A.K. 2007. Emerging trends in functional genomics of abiotic response in crop plants. Plant Biotech. J. 5:361-380.
35. Verma, V. & Dasgupta, I. 2007.   Sequence analysis of the genomes of two Rice tungro spherical virus isolates from India. Archive of Virology 152: 645-648.
36. Verma, V. & Dasgupta, I. 2007. Molecular analysis of coat protein genes of Rice tungro spherical virus from eastern and southern India. Indian Phytopathology 60: 99-104.

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